PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g62850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 262aa    MW: 28859.4 Da    PI: 5.5435
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g62850genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001381103123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C + F++   L  H+++H
  CA00g62850  81 YTCTFCRREFRSAQALGGHMNVH 103
                 9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-678108No hitNo description
PROSITE profilePS5015711.15781108IPR007087Zinc finger, C2H2
PfamPF139122.0E-581104IPR007087Zinc finger, C2H2
SMARTSM003550.006681103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAAELGILSS TQLQKLAQSQ EEQNQQPPPP LDTGSASDCW MWNAKQATRA TPQDDDDSWE  60
VRAFEEDTGN AMGTTWPPRS YTCTFCRREF RSAQALGGHM NVHRRDRARL HQTPPQYASN  120
SNYHNHTSSP NANSTLLIPT QEFVANGGLC LLYSLPNPSN THVFNPTSRK SCTLNNNSSP  180
STLNLSISPY PTNNLMSPST PCPLSFPINR PNPSINTSSN TSNDDNNHDY GINTRDSTIE  240
DELDLELRLG WRSSSSTTSS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-1376103229superman protein
2l1o_A2e-1376103229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-164HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554111.10.0PREDICTED: zinc finger protein JAGGED
TrEMBLM1BH621e-117M1BH62_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000451481e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-36C2H2 family protein